Genetic Diversity of Rabbitfish (Siganus) and Cobia (Ranchycentron Canadum) From Indonesia and Taiwan
Keywords:
Cobia, Rabbitfish, Species-Stocks Identification, AFLP, Multivariate Analysis
Abstract
Genetic diversity of rabbitfish (Siganus) and cobia (Ranchycentron canadum) from Indonesia and Taiwan was compared. Rabbitfish was fisheries commodities and cobia was cultured in Taiwan and Indonesia. Study aimed to compared genetic diversity of both species as a references for conservation and culture species. Finger printing DNA method were AFLP (amplified fragment length polymorphism) within two primers use to assesed their diverence. Multivariate analysis was used to amount statistical similarities within DNA fragments of AFLPs. Results showed there is two different species of rabbitfish within Hurun Bay of Lampung were Siganus fuscescens dan S.gutattus. Indepth analysis also shown rabbitfish from Taiwan was different with Indonesia showed by genetic distance. These results showed there is no relation within ancestor of rabbitfish from this two locations.Contrast with cobia, Taiwan stocks seperated in two groups and one of Indonesia group joined with Taiwan group and the other independently. These results showed cobia from Indoneisa only limited population of cobia from Taiwan. This study recommended rabbitfish from Hurun Bay of Lampung was pure and genetically approved as cultue fish species. Indonesia may use other cobia stocks from Taiwan, in case there is inbreeding depression threats the established Indonesia cobia stocks.
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References
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Barbieri, E and S.A.Doi.2012.Acute Toxicity of Ammonia on Juvenile Cobia (Rachycentron canadum, Linnaeus, 1766) According to the Saliniy.Aquacult.Int. 20:373-382.
Benetti, D.D., B.Sardenberg, A.Welch., R.Hoenig, M.R.Orhum and I.Zink.2008a.Intensive Larval Husbandry and Fingerling Production of Cobia Rachycentron canadum.Aquaculture 281:22-27.
Benetti, D.D., M.R.Orhum, B.Sardenberg, B. O’hanlon, A.Welch, R.Hoenig., I.Zink. b.A.Rivera., B.Denlinger, D.Bacoat. K.Palmer and F.Cavalin.2008b. Advances in Hatchery and Grow-Out Technology of Cobia Rachycentron canadum (Linnaeus).Aquaculture Research 39:701-711.
Capper, A., I.R.Tibbetts, J.M.O.Neil and G.R.Shaw.2006.Feeding preference and deterrence in rabbitfish Siganus fuscescens for the Cyanobacterium Lyngbya majuscula in Moreton Bay, South-East Queensland, Australia. Journal of Fish Biology 68:1589-1609.
Chen, S-C., R-J.Kou., C-T.Wu., P-C.Wang and F.Z. Su.2001.Mass Mortality Associated with a Sphaerospora-like Myxosporidean Infestation in Juvenile Cobia, Rachycentron canadum (L), Marine Cage Cultured in Taiwan. Journal of Fish Diseases 24:189-195.
Colburn, H.R., A.B. Walker and D.L. Berlinsky.2008. Factors Affecting Survival of Cobia, Ranchycentron canadum, during Simulated Transport. Journal of the World Aquaculture Society 39(5):678-683.
El-Sayed, A.-F. M.1995.Effcets of Stocking Density and Feeding Level on Growth Rates and Feed Utilization of Rabbitfish Siganus canaliculatus. Journal of The World Aquaculture Society 26(2): 212-216.
Faulk, C.K. and G.J.Holt.2008.Biochemichal Composition and Quality of Captive-Spawned Cobia Rachycentron canadum eggs. Aquaculture 279:70-76.
Froese, R. and Pauly, D. 2011.Fishbase. Available at http://www.fishbase.org/search.php/ (last aceessed February 2011).
Fry, G.C. and S.P. Griffiths.2010.Population Dynamic and Stock Status of Cobia, Rachycentron canadum, caught in Australian Recreational and Commercial Coast Fisheries.Fisheries Management and Ecology 17:231-239.
Ghanawi, J., I.P.Saoud and S.M. Shabaly.2010. Effect of Size Sorting on Growth Performance of Juvenile Spinefoot Rabbitfish, Siganus rivulatus. Journal of The World Aquaculture Society 41(4): 565-573.
Grandcourt, E., T.Al Abdessalam, F.Francis and A.Al Shamsi.2007.Population Biology and Assessment of the White-Spotted Spinefoot, Siganus canalicalatus (Park,1797), in the Southern Arabian Gulf.J.Appl. Ichthyol. 23:53-59.
Gwo, J.-C., W.-T. Yang., M.-C. Kuo, A.Takemura, and H.-Y.Cheng. 2004. Spermatozoal Ultrastructure of Two Marine Perciform Teleost Fishes, Goatfish, Paraupeneus spilurus (Mullidae) and teh rabbitfish, Siganus fuscescens (Siganidae) from Taiwan. Tissue & Cell 36:63-69.
Harahap, A.P., A.Takemura, S.Nakamura, Md. S. Rahman, and K. Takano.2001.Histological Evidence of Lunar-Synchronized Ovarian Development and Spawning in the Spiny Rabbitfish Siganus spinus (Linnaeus) Around the Ryukyus. Fisheries Science 67:888-893.
Harahap, A.P., A.Takemura, Md. S. Rahman, S.Nakamura and K. Takano.2002. Lunar Synchronization of Sperm Motility in the Spiny Rabbitfish Siganus spinus (Linnaeus). Fisheries Science 68:706-708.
Hoque, M.M., A.Takemura., M.Matsuyama, S.Matsura and K.Takano.1999.Lunar Spawning in Siganus canaliculatus.Journal of Fish Biology 55:1213-1222.
Hsu, T.-H., Y.T.Adiputra., C.P.Burridge and J.-C.Gwo.2011. Two Spinefoot Colour Morphs: Mottled Spinefoot Siganus fuscescens and White-Spotted Spinefoot Siganus canaliculatus are Synonyms. Journal of Fish Biology 79:1350-1355.
Liu , K., X.J. Wang., Q.Ai., K. Mai and W.Zhang.2010.Dietary Selenium Requirement for Juvenile Cobia, Rachcentron canadum L.Aquaculture Research 41:e594-e601.
Liu, P-C., J-Y. Lin, and K-K. Lee.2003.Virulence of Photobacterium damselae subsp.piscicida in Cultured Cobia Rachycentron canadum. J.basic Microbiol 43:499-507.
Liu, S.C., D.T. Li., P.Z.Hong., C.H.Zhang., H.W. Ji, J.L.Gao and L.Zhang.2009.Cholesterol, Lipid Content, and Fatty Acid Composition of Different Tissues of farmed Cobia (Rachycentron canadum) from China.J.Am.Oil Chem.Soc.86:1155-1161.
Nguyen, H.Q., H.Reinertsen, T.Rustad, T.M.Tran and E.Kjørsvik.2012.Evaluation of egg quality in broodstock cobia Rachycentron canadum L. Aquaculture Research 42:371-385.
Nhu, V.C., H.Q.Nguyen, T.L. Le. M.T.Tran., P.Sorgeloos, K.Dierckens, H.Reinersten, E. Kjørsvik and N. Svennevig.2011.Cobia Rachycentron canadum Aquaculture in Vietnam:Recent Developments and Prospects. Aquaculture 315:20-25.
Pillans, R.D., C.E.Franklin and I.R.Tibbetts.2004. Food Choice in Siganus fuscescens: Influence of Macrophyte Nutrient Content and Availability.Journal of Fish Biology 64:297-309.
Pruett, C.L., E.Saillant., M.A.Renshaw, J.C.Patton., C.E.Rexroad III and J.R.Gold.2005.Microsatellite DNA Markers for Population Genetic Studies and Parantage Assignment in Cobia, Rachycentron canadum. Molecular Ecology Notes 5:84-86.
Rahman, Md. S., A.Takemura and K.Takano.2000a.Annual Changes in Testicular Activity ad Plasma Steroid Hormones in the Golden Rabbitfish Siganus guttatus (Bloch).Fisheries Science 66:894-900.
Rahman, Md.S.,A.Takemura, and K.Takano.2000b.Correlation between Plasma Steroid Hormones and Vitellogenin Profiles and lunar Periodicity in the Female Golden rabbitfish, Siganus guttatus (Bloch).Comparative Biochemistry and Physiology B 127:113-122.
Rahman, Md.S.,A.Takemura and K.Takano.2002.Lunar Syncronization of In Vitro Steroidogenesis in Ovaries of the Golden Rabbitfish, Siganus guttatus (Bloch). General and Comparative Endocrinology 125:1-8.
Ravago-Gotanco, R., C.Y.Lumibao and M. J.R.Pante.2010a. Isolation and Characterization of Thirteen Microsatellite Markers for the Rabbitfish, Siganus fuscescens.Conservation Genet.Resour. 2:225-227.
Ravago-Gotanco, R.G., and M.A.Juinio-Menez.2010b. Phylogeography of the Mottled Spinefoot Siganus fuscescens: Pleistocene Divergence and Limited Genetic Connectivity Across the Philipines Archipelago.Molecular Ecology 19:4520-4534.
Ravago-Gotanco, R.G., M.T.Manglicmot and M.J.R.Pante.2010c. Multiplex PCR and RFLP Approaches for Identification of Rabbitfish (Siganus) Species Using Mitochondrial Gene Regions.Molecular Ecology Resources 10:741-743.
Renshaw, M.A., E.Saillant., S.C.Bradfield and J.R.Gold.2006.Microsatellite Multiplex Panels for Genetic Studies of Three Species of Marine Fishes:Red Drum (Sciaenops ocellatus), red snapper (Lutjanus campechanus), and Cobia (Rachycentron canadum).Aquaculture 253:731-735.
Saadiah, I., A.M.Abol-Munafi and C.M. Che Utama.2011.Replacement of Fishmeal in Cobia (Rachycentron canadum) Diets Using Poultry by-Product Meal. Aquacult. Int. 19:637-648.
Sampaio, L.A., C.B.Moriera, K.C. Miranda-Filho and A.N. Rombenso.2011.Culture of Cobia Rachycentron canadum (L) in Near-Shore Cages Off the Brazilian Coast.Aquaculture Research 42:832-834.
Shih, H.-H., C.-C. Ku and C.-S. Wang. 2010. Anisakis simplex (Nematoda:Anisakidae) Third-Stage Larval Infections of Marine Cages Cultured Cobia, Rachycentron canadum L., in Taiwan.Veterinary Parasitology 17:277-285.
Soedibjo, B.2008.Analisis Komponen Utama dalam Kajian Ekologi.Oseana 33(2):43-53.
Tacon, A.G.J., and N. Rausin, M. Kadari and P.Cornelis. 1990.The Food and Feeding of Marine Finfish in Floating Net Cages at The National Seafarming Development Centre Lampung, Indonesia: Rabbitfish, Siganus canaliculatus (Park). Aquaculture and Fisheries Management 21:375-390.
Tang, B.G., G.Chen and Z.H.Wu.2010. Application of a Microdiet in Cobia Rachycentron canadum (Linnaeus, 1766) Larvae Rearing.Aquaculture Research 41:315-230.
Wassef, E.A., and H.A.A. Hady.1997. Breeding Biology of Rabbitfish Siganus canaliculatus (Siganidae) in Mid Arabian Gulf. Fisheries Research 33:159-166.
Woodland, D.J.1990. Revision of the Fish Family Siganidae with Description of Two New Species ad Comments on Distribution and Biology. Indo-Pacific Fishes 19:1-136.
Xiao, L.D., K.S.Mai., Q.H.Ai., W.Xu., X.J. Wang, W.B.Zhang and Z.G.Liufu.2010.Dietary Ascorbic Acid Requirement of Cobia, Rachycentron canadum Linnaeus.Aquaculture Nutrition 16:
Arnold, C.R., J.B. Kaiser and G.J. Holt.2002.Spawning of Cobia Rachycentron canadum in Captivity.Journal of the World Aquaculture Society 33(2):205-208.
Barbieri, E and S.A.Doi.2012.Acute Toxicity of Ammonia on Juvenile Cobia (Rachycentron canadum, Linnaeus, 1766) According to the Saliniy.Aquacult.Int. 20:373-382.
Benetti, D.D., B.Sardenberg, A.Welch., R.Hoenig, M.R.Orhum and I.Zink.2008a.Intensive Larval Husbandry and Fingerling Production of Cobia Rachycentron canadum.Aquaculture 281:22-27.
Benetti, D.D., M.R.Orhum, B.Sardenberg, B. O’hanlon, A.Welch, R.Hoenig., I.Zink. b.A.Rivera., B.Denlinger, D.Bacoat. K.Palmer and F.Cavalin.2008b. Advances in Hatchery and Grow-Out Technology of Cobia Rachycentron canadum (Linnaeus).Aquaculture Research 39:701-711.
Capper, A., I.R.Tibbetts, J.M.O.Neil and G.R.Shaw.2006.Feeding preference and deterrence in rabbitfish Siganus fuscescens for the Cyanobacterium Lyngbya majuscula in Moreton Bay, South-East Queensland, Australia. Journal of Fish Biology 68:1589-1609.
Chen, S-C., R-J.Kou., C-T.Wu., P-C.Wang and F.Z. Su.2001.Mass Mortality Associated with a Sphaerospora-like Myxosporidean Infestation in Juvenile Cobia, Rachycentron canadum (L), Marine Cage Cultured in Taiwan. Journal of Fish Diseases 24:189-195.
Colburn, H.R., A.B. Walker and D.L. Berlinsky.2008. Factors Affecting Survival of Cobia, Ranchycentron canadum, during Simulated Transport. Journal of the World Aquaculture Society 39(5):678-683.
El-Sayed, A.-F. M.1995.Effcets of Stocking Density and Feeding Level on Growth Rates and Feed Utilization of Rabbitfish Siganus canaliculatus. Journal of The World Aquaculture Society 26(2): 212-216.
Faulk, C.K. and G.J.Holt.2008.Biochemichal Composition and Quality of Captive-Spawned Cobia Rachycentron canadum eggs. Aquaculture 279:70-76.
Froese, R. and Pauly, D. 2011.Fishbase. Available at http://www.fishbase.org/search.php/ (last aceessed February 2011).
Fry, G.C. and S.P. Griffiths.2010.Population Dynamic and Stock Status of Cobia, Rachycentron canadum, caught in Australian Recreational and Commercial Coast Fisheries.Fisheries Management and Ecology 17:231-239.
Ghanawi, J., I.P.Saoud and S.M. Shabaly.2010. Effect of Size Sorting on Growth Performance of Juvenile Spinefoot Rabbitfish, Siganus rivulatus. Journal of The World Aquaculture Society 41(4): 565-573.
Grandcourt, E., T.Al Abdessalam, F.Francis and A.Al Shamsi.2007.Population Biology and Assessment of the White-Spotted Spinefoot, Siganus canalicalatus (Park,1797), in the Southern Arabian Gulf.J.Appl. Ichthyol. 23:53-59.
Gwo, J.-C., W.-T. Yang., M.-C. Kuo, A.Takemura, and H.-Y.Cheng. 2004. Spermatozoal Ultrastructure of Two Marine Perciform Teleost Fishes, Goatfish, Paraupeneus spilurus (Mullidae) and teh rabbitfish, Siganus fuscescens (Siganidae) from Taiwan. Tissue & Cell 36:63-69.
Harahap, A.P., A.Takemura, S.Nakamura, Md. S. Rahman, and K. Takano.2001.Histological Evidence of Lunar-Synchronized Ovarian Development and Spawning in the Spiny Rabbitfish Siganus spinus (Linnaeus) Around the Ryukyus. Fisheries Science 67:888-893.
Harahap, A.P., A.Takemura, Md. S. Rahman, S.Nakamura and K. Takano.2002. Lunar Synchronization of Sperm Motility in the Spiny Rabbitfish Siganus spinus (Linnaeus). Fisheries Science 68:706-708.
Hoque, M.M., A.Takemura., M.Matsuyama, S.Matsura and K.Takano.1999.Lunar Spawning in Siganus canaliculatus.Journal of Fish Biology 55:1213-1222.
Hsu, T.-H., Y.T.Adiputra., C.P.Burridge and J.-C.Gwo.2011. Two Spinefoot Colour Morphs: Mottled Spinefoot Siganus fuscescens and White-Spotted Spinefoot Siganus canaliculatus are Synonyms. Journal of Fish Biology 79:1350-1355.
Liu , K., X.J. Wang., Q.Ai., K. Mai and W.Zhang.2010.Dietary Selenium Requirement for Juvenile Cobia, Rachcentron canadum L.Aquaculture Research 41:e594-e601.
Liu, P-C., J-Y. Lin, and K-K. Lee.2003.Virulence of Photobacterium damselae subsp.piscicida in Cultured Cobia Rachycentron canadum. J.basic Microbiol 43:499-507.
Liu, S.C., D.T. Li., P.Z.Hong., C.H.Zhang., H.W. Ji, J.L.Gao and L.Zhang.2009.Cholesterol, Lipid Content, and Fatty Acid Composition of Different Tissues of farmed Cobia (Rachycentron canadum) from China.J.Am.Oil Chem.Soc.86:1155-1161.
Nguyen, H.Q., H.Reinertsen, T.Rustad, T.M.Tran and E.Kjørsvik.2012.Evaluation of egg quality in broodstock cobia Rachycentron canadum L. Aquaculture Research 42:371-385.
Nhu, V.C., H.Q.Nguyen, T.L. Le. M.T.Tran., P.Sorgeloos, K.Dierckens, H.Reinersten, E. Kjørsvik and N. Svennevig.2011.Cobia Rachycentron canadum Aquaculture in Vietnam:Recent Developments and Prospects. Aquaculture 315:20-25.
Pillans, R.D., C.E.Franklin and I.R.Tibbetts.2004. Food Choice in Siganus fuscescens: Influence of Macrophyte Nutrient Content and Availability.Journal of Fish Biology 64:297-309.
Pruett, C.L., E.Saillant., M.A.Renshaw, J.C.Patton., C.E.Rexroad III and J.R.Gold.2005.Microsatellite DNA Markers for Population Genetic Studies and Parantage Assignment in Cobia, Rachycentron canadum. Molecular Ecology Notes 5:84-86.
Rahman, Md. S., A.Takemura and K.Takano.2000a.Annual Changes in Testicular Activity ad Plasma Steroid Hormones in the Golden Rabbitfish Siganus guttatus (Bloch).Fisheries Science 66:894-900.
Rahman, Md.S.,A.Takemura, and K.Takano.2000b.Correlation between Plasma Steroid Hormones and Vitellogenin Profiles and lunar Periodicity in the Female Golden rabbitfish, Siganus guttatus (Bloch).Comparative Biochemistry and Physiology B 127:113-122.
Rahman, Md.S.,A.Takemura and K.Takano.2002.Lunar Syncronization of In Vitro Steroidogenesis in Ovaries of the Golden Rabbitfish, Siganus guttatus (Bloch). General and Comparative Endocrinology 125:1-8.
Ravago-Gotanco, R., C.Y.Lumibao and M. J.R.Pante.2010a. Isolation and Characterization of Thirteen Microsatellite Markers for the Rabbitfish, Siganus fuscescens.Conservation Genet.Resour. 2:225-227.
Ravago-Gotanco, R.G., and M.A.Juinio-Menez.2010b. Phylogeography of the Mottled Spinefoot Siganus fuscescens: Pleistocene Divergence and Limited Genetic Connectivity Across the Philipines Archipelago.Molecular Ecology 19:4520-4534.
Ravago-Gotanco, R.G., M.T.Manglicmot and M.J.R.Pante.2010c. Multiplex PCR and RFLP Approaches for Identification of Rabbitfish (Siganus) Species Using Mitochondrial Gene Regions.Molecular Ecology Resources 10:741-743.
Renshaw, M.A., E.Saillant., S.C.Bradfield and J.R.Gold.2006.Microsatellite Multiplex Panels for Genetic Studies of Three Species of Marine Fishes:Red Drum (Sciaenops ocellatus), red snapper (Lutjanus campechanus), and Cobia (Rachycentron canadum).Aquaculture 253:731-735.
Saadiah, I., A.M.Abol-Munafi and C.M. Che Utama.2011.Replacement of Fishmeal in Cobia (Rachycentron canadum) Diets Using Poultry by-Product Meal. Aquacult. Int. 19:637-648.
Sampaio, L.A., C.B.Moriera, K.C. Miranda-Filho and A.N. Rombenso.2011.Culture of Cobia Rachycentron canadum (L) in Near-Shore Cages Off the Brazilian Coast.Aquaculture Research 42:832-834.
Shih, H.-H., C.-C. Ku and C.-S. Wang. 2010. Anisakis simplex (Nematoda:Anisakidae) Third-Stage Larval Infections of Marine Cages Cultured Cobia, Rachycentron canadum L., in Taiwan.Veterinary Parasitology 17:277-285.
Soedibjo, B.2008.Analisis Komponen Utama dalam Kajian Ekologi.Oseana 33(2):43-53.
Tacon, A.G.J., and N. Rausin, M. Kadari and P.Cornelis. 1990.The Food and Feeding of Marine Finfish in Floating Net Cages at The National Seafarming Development Centre Lampung, Indonesia: Rabbitfish, Siganus canaliculatus (Park). Aquaculture and Fisheries Management 21:375-390.
Tang, B.G., G.Chen and Z.H.Wu.2010. Application of a Microdiet in Cobia Rachycentron canadum (Linnaeus, 1766) Larvae Rearing.Aquaculture Research 41:315-230.
Wassef, E.A., and H.A.A. Hady.1997. Breeding Biology of Rabbitfish Siganus canaliculatus (Siganidae) in Mid Arabian Gulf. Fisheries Research 33:159-166.
Woodland, D.J.1990. Revision of the Fish Family Siganidae with Description of Two New Species ad Comments on Distribution and Biology. Indo-Pacific Fishes 19:1-136.
Xiao, L.D., K.S.Mai., Q.H.Ai., W.Xu., X.J. Wang, W.B.Zhang and Z.G.Liufu.2010.Dietary Ascorbic Acid Requirement of Cobia, Rachycentron canadum Linnaeus.Aquaculture Nutrition 16:
Published
2018-04-01
How to Cite
Gwo, J., Adiputra, Y., & Hsu, T. (2018). Genetic Diversity of Rabbitfish (Siganus) and Cobia (Ranchycentron Canadum) From Indonesia and Taiwan. Inovasi Pembangunan : Jurnal Kelitbangan, 6(01), 27-38. Retrieved from https://jurnal.balitbangda.lampungprov.go.id/index.php/jip/article/view/54
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